Flowing Water and Riparian Habitats

The Necanicum River in Oregon's Coast Range. Photo Credit: Herman Biederbeck, ODFW

Flowing Water and Riparian Habitats include all naturally occurring flowing freshwater streams and rivers throughout Oregon as well as the adjacent riparian habitat.

Ecoregions

Flowing Water and Riparian Habitats are identified as a Key Habitat in all ecoregions.

Characteristics

Flowing Water Habitats

Flowing creeks, streams, and rivers are a key feature of the Oregon landscape and our natural resources heritage. They support diverse ecosystems and fisheries, and provide significant social, economic, and recreational values. Healthy flowing freshwater systems are crucial to support iconic Pacific Northwest salmon and steelhead as well as amphibians, aquatic insects, and other Species of Greatest Conservation Need (SGCN). People also rely on healthy waterways to irrigate crops, generate hydroelectric power, operate manufacturing plants, treat wastewater, and for drinking water.

Natural, freshwater flowing waters are dynamic systems that typically start as small, high elevation creeks that merge with mid-elevation streams and then combine to form large river systems. Flowing waters are fed by a variety of sources, including melting glaciers and snow, direct runoff from the surrounding landscape or watershed, and via groundwater discharge such as springs. Flowing water habitat includes perennial, intermittent, and ephemeral creeks, streams, and rivers. Perennial waterways are those that flow year-round, whereas intermittent waterways only flow part of the year, typically during the wet season. Ephemeral waterways only flow during a short period after a precipitation event.

Healthy streams include structural variability essential for SGCN to meet their life cycle needs. For example, pools and riffles provide a range of stream flows and depths, and backwater alcoves and side channels are essential for refugia during high flows. Ephemeral streams, though flowing only during snowmelt or rain events, also provide important refugia for anadromous and local fish species during spring high waters. The shape and dynamics of a stream or river are typically defined by high winter/spring flows and flooding patterns, the degree of human impact on water quantity, water quality, the surrounding landscape, geology/soils in the adjacent floodplain and watershed, and the width of the available floodplain.

Floodplains are diverse habitats adjacent to rivers, streams, lakes, estuaries, or other water bodies that are subject to flooding. In their undisturbed, natural state, these areas act to store excess floodwater, which can protect downstream property from flooding, and release water slowly, extending availability of instream flow. Floodplains also provide essential habitat for fish and wildlife, including refugia from high stream flows and corridors for wildlife.

Healthy streams are typically connected to their floodplain, exhibit natural variability in flow amount and timing, and are dynamic and free to evolve based on natural events such as wood falling into the river, channels changing course, high flow events, and landslides. The complexity of the flowing water habitat and associated floodplain directly contributes to the health and function of habitat for both fish and wildlife. Protection of habitats surrounding perennial, intermittent, and ephemeral creeks, streams, and rivers helps to minimize impacts to flowing waters while providing benefits to water temperature and water quality.

Climate-related changes in precipitation patterns, snowmelt cycles, and fire frequency, as well as increased demand for out-of-stream water use will alter flowing water systems relative to historical conditions. A changing climate has the potential to alter hydrologic regimes and water availability, leaving less water to meet various flowing water, floodplain, and habitat needs.

Protection, maintenance, and restoration of our ecosystems are needed to enhance resiliency by increasing natural storage capacity, improving instream habitat and fish passage, protecting and restoring wetlands and instream flow, eradicating invasive species, protecting native plant communities, and protecting groundwater-dependent ecosystems. Land and water management activities need to protect and improve water quantity and quality, including protecting our watersheds and drinking water sources from contamination and pollution.

Riparian Habitats

Riparian habitat zones are adjacent to flowing water in creeks, rivers, and streams as well as springs, seeps, and terraces. They occur at all elevations, from valley bottom floodplains to alpine torrents, and are shaped through seasonal flooding, scour, and soil deposition. Riparian habitats provide food, cover, and/or breeding sites for many fish and wildlife species throughout the year.

Riparian zones are the dynamic interface between land and flowing water. The plant assemblages and communities in riparian zones help buffer inputs and the cycling of nutrients, as well as provide habitat for aquatic and terrestrial life. The vegetative composition and structure of riparian zones vary, and are a function of elevation, precipitation pattern, stream gradient, aspect, floodplain width, storage capacity of the soil, groundwater supply, and disturbance (i.e., flooding).

In many areas of the state, native riparian vegetation is comprised mostly of deciduous trees and shrubs, such as big-leaf maple, alders, aspen, cottonwood, dogwood, willows, and Oregon ash. Conifers, such as pines, firs, and spruce, dominate some riparian zones at higher elevations and are important in some lower elevation areas as well (e.g., interior Rogue basin). Riparian shrublands may include willows, red osier dogwood, western birch, hawthorn, alder, and chokecherry. Riparian meadows are dominated by grasses, sedges, and rushes.

The Flowing Water and Riparian Key Habitat does not include irrigation structures (e.g., ditches) or other man-made waterbodies such as reservoirs. Natural lakes are covered separately, as are Springs, Seeps, and Headwaters and Spring-fed Streams. The riparian zones around the edges of natural lakes are included within the Wetlands Key Habitat.

Conservation Overview

Flowing water and the riparian habitat found along its banks are defined together as a Key Habitat because their distribution and conservation roles are interconnected. Water is crucial for all fish and wildlife, and high-quality freshwater aquatic systems provide essential habitat to many at-risk species, including important spawning and rearing habitat for salmonids, breeding habitat for amphibians, and habitat for freshwater mussels and other invertebrates. Flowing water is important to connect ecosystems across elevations throughout the year. In many locations throughout Oregon, water flow and hydrology have been impacted by development for human needs, including barriers (e.g., roads, dams, and culverts) and water diversions for out-of-stream uses, that has reduced instream flow, increased summer stream temperatures, and interfered with fish and wildlife migration. Instream flow and water quality are not sufficient in much of the state to meet instream needs. In addition, channelization and floodplain development can restrict the natural ability of streams to meander over time, limiting the quality and availability of these habitats, as well as affecting floodplain function.

Riparian habitats often have high species diversity and are critical for fish and wildlife, especially for those species that prefer moist, shrubby, or forested habitats. Riparian habitats provide shade that can maintain favorable water temperature for fish and other aquatic life and provide a cooler temperature refuge for terrestrial species. These areas also provide essential travel corridors for birds, amphibians, reptiles, mammals, and other wildlife. In arid areas, such as the Blue Mountains, Northern Basin and Range, and Columbia Plateau ecoregions, riparian habitats can provide abundant insects, plants, and moisture throughout the year. Riparian meadows include natural spring-seep habitats that are extremely important for a wide variety of species, including Greater Sage-Grouse.

In addition to providing habitat for birds and other wildlife, riparian habitats have important ecological functions. Healthy riparian vegetation serves an important role in slowing water velocities during periods of high runoff and protecting streambeds from scouring and downcutting.  Riparian vegetation also protects stream banks from erosion, influences in-channel aquatic habitats, filters run off, drives channel complexity in valley bottoms, and provides nutrients to support terrestrial and aquatic life. Riparian habitats often link upland and aquatic habitats, which facilitates the role upland habitats play in watershed function.

Riparian habitats have declined from historical levels and are now greatly reduced in area and connectivity, especially those in low-elevation areas and valley bottoms. Non-native and often invasive vegetation dominates in many areas. Development, logging, roads, agricultural practices, beaver removal, and grazing can further degrade riparian habitat. Removal or reduction of riparian habitat allows runoff containing contaminants such as fertilizers and pesticides to reach streams and rivers where it can negatively impact aquatic life.

Oregon Planning and Regulatory Background for Flowing Waters

Under Oregon law, water is a public resource, meaning that all water belongs to the public. Cities, irrigators, businesses, and other water users must obtain a permit or license from the Oregon Water Resources Department (OWRD) to use water from any source, whether it is underground, or from lakes or streams, with some exceptions. OWRD is responsible for allocating new uses of water, whether in cities, farms, factories, or for improvement of fish habitat, and follows a careful process to preserve the investments already made in the state.

Oregon’s Water Code, established in 1909, created a system of water allocation and distribution that did not consider water for instream uses, leading to degradation of Oregon’s flowing water and freshwater habitats. Over time, it became clear that a legal system was needed to protect flows in support of ecological uses. In response, the 1987 Instream Water Rights Act officially recognized instream flows as a beneficial use that could be protected by a water right, giving them the same legal status as consumptive water rights. Instream water rights are the state’s mechanism to provide water for fish and wildlife needs and healthy ecosystems that support multiple public uses (e.g., recreation, fishing, tourism). If there is a conflict between users, however, the date of priority determines who may use the available water and most instream water rights are quite junior compared to many out-of-stream water rights.

Oregon’s Planning and Regulatory Background for Riparian Habitats

Oregon’s planning and regulatory framework provides tools to address riparian habitat conservation issues. Riparian habitat is considered a Goal 5 resource, where local governments can adopt protective ordinances through comprehensive plans to establish riparian buffers. Streamside buffers are also implemented through the Northwest Forest Plan (NWFP) on public land and the Oregon Forest Practices Act on state and private land, and are designed to protect riparian health in forested landscapes. On agricultural lands, Agricultural Water Quality Management Area Rules and Plans have been adopted across the state to address riparian conditions and other water quality issues. While each riparian rule is slightly different depending on the local area, the riparian rules generally require agricultural activities to allow establishment, development, and maintenance of riparian vegetation consistent with site capability to provide moderation of solar heating, filtration of overland flow, and streambank stability. The Oregon Water Resources Department also has rules that require the riparian area to be restored or enhanced if it is disturbed in the process of developing a point of diversion.

Limiting Factors and Recommended Approaches

Limiting Factor: Water Quantity

Multiple factors are affecting the amount of water in Flowing Water Habitats. Water diversions for out-of-stream uses occur on all major streams, and valley bottoms often have multiple canals that divert water away from the natural channel. Water availability is limited in much of the state, especially during the low flow summer and fall months. Low flows are associated with higher water temperatures and higher nutrient and contaminant concentrations in creeks, streams, and rivers. As a result, the instream needs of fish and wildlife are largely not being met. Out-of-stream needs are expected to increase with population growth and under a changing climate, further competing with instream flow available for fish and wildlife habitat. Riparian bottomland habitats also compete for water with other uses, particularly in the Blue Mountains, Columbia Plateau, East Cascades, Klamath Mountain, and Northern Basin and Range ecoregions.

Recommended Approach

Conduct instream flow studies to develop ecological flow targets and apply for associated instream water rights to legally protect instream flow. Engage with regulatory agencies to ensure consideration of fish and wildlife needs in water right and hydropower processes. Identify priority locations for voluntary instream transfers and leases. Implement water conservation actions to protect or increase instream flows (quantity, timing, and duration) following the natural hydrological cycle. Increase pace and scale of voluntary flow restoration through instream leases, transfers, and irrigation efficiency improvements. Manage beaver populations to contribute to water storage and availability, when compatible with existing land uses. Pursue collaborative water planning and implementation processes to secure balanced solutions for water management. Provide incentives and information about water conservation and sharing at key times of low flow conditions (e.g., late summer).

Limiting Factor: Invasive Aquatic Species

Alterations in hydrology can make flowing water habitat more susceptible to invasive plants, invertebrates, and fish. Invasive fish species (e.g. bass, crappie, bluegill, yellow perch, bullhead, carp, brook trout, fat head minnow, non-native ringed crayfish) can compete with native fish and amphibians for food resources and habitat, prey on native species, alter habitat, or hybridize with native fish. For example, non-native carp can overgraze aquatic vegetation and stir up sediment, depriving native fish and amphibians of egg-laying sites or preventing eggs from absorbing enough oxygen to develop. Invasive mollusks (e.g. zebra mussel, quagga mussels) can disrupt food chains by reducing the availability of food for larval and juvenile fishes. They also attach easily to boats, docks and buoys and can clog intake pipes as well as drains. Invasive plants (e.g. Ludwigia spp., watermilfoil, parrot feather, hydrilla) can reduce light penetration, lower species diversity, alter temperature, reduce dissolved oxygen and pH, and disrupt nutrient cycling, leading to algae blooms and toxicity.

Recommended Approach

Work with community partners to restore and maintain natural hydrologic regimes to ensure habitat conditions best support native fish and wildlife. Continue working with the public to stress the importance of preventative measures for excluding and detecting quagga and zebra mussels from Oregon waterways. Where appropriate, work to minimize predation on sensitive native species. Where non-native aquatic species threaten SGCN, consider site-appropriate tools (e.g., mechanical or chemical treatment) in locations and during seasons where they will not harm native amphibians, fish, or invertebrates. Educate and inform people about the problems that can be caused by invasive species, including the harm of releasing aquarium fish or nonnative fish into our rivers, dumping non-native aquarium plants in waterbodies, and the importance of having boats cleaned before moving to a different waterbody.

Limiting Factor: Passage Barriers and Channel Complexity

Channel complexity is important for fish and wildlife, and they depend on natural flow regimes and substrates for breeding, foraging, cover, and migration. For example, woody debris and other natural structures provide nutrient cycling and refugia from predators and high temperatures. Dams, road culverts, or other human-made barriers can restrict movement of fish and wildlife, alter instream flow, and restrict bedload movement and the fluvial processes necessary to create the types of riparian and stream habitats to which native species are adapted. Large dams disrupt natural hydrologic regimes, which decreases the amount of bottomland habitat and impacts anadromous and other migratory fish passage upstream and downstream. Additionally, altered flow regimes can contribute to unnatural temperature regimes in some streams, making habitat inhospitable.

Misaligned culverts disconnect stream passage corridors, block fish passage, and may force wildlife to cross over roads where they are vulnerable to vehicles and predators. Undersized or improperly sized culverts can alter the transport of sediment and wood, creating an uneven distribution of instream habitat.

Recommended Approach

Work with landowners and regulatory agencies to protect and restore natural flow and channel conditions on streams impacted by barriers. Eliminate passage barriers or improve passage at existing barriers to provide travel corridors for fish and wildlife. Design future projects with appropriately sized culverts to accommodate adaptation to modeled hydrologic regimes with climate change. Replace culverts or other passage barriers with structures that mimic natural conditions as closely as possible (e.g., bridges or open-bottom arch culverts). Provide additional passage structures for fish and wildlife at culverts. Provide sufficient channel complexity to maintain ecological benefits for fish and wildlife.

Limiting Factor: Pollution

Point and non-point source pollution are of concern in both rural and urban areas. Point source pollution from industrial, domestic, and stormwater treatment may contain high levels of contaminants. Non-point source pollution in flowing waters and adjacent floodplains can contain fertilizers, pesticides, or oil-based pollutants at levels high enough to cause significant lethal or sub-lethal effects in native fish and wildlife. Agricultural runoff  and high concentrations of livestock in or near streams can degrade water quality through excessive nutrient and bacteria inputs. Agricultural runoff may also carries pesticides from treated fields into flowing waterways. High nutrient concentrations in streams can cause anoxic conditions, excessive aquatic vegetation, and harmful algae blooms. Pesticides in flowing waterways have the potential to damage all forms of aquatic life and may accumulate in the tissue of fish and waterfowl consumed by other wildlife and humans.

Recommended Approach

Increase awareness of the impacts of urban and rural runoff. Treat stormwater runoff that flows directly into streams to address tire-wear particles and their associated contaminants (e.g. 6PPD-q), an emerging concern in the Pacific Northwest. Reduce stormwater runoff and increase permeability in urban areas with bioswales. Use stormwater catchment basins designed for larger volume, longer residence, and a high degree of shading to mimic the delay, treatment, infiltration, and cooling functions of natural wetlands. Reduce sewage overflows during major rain events where raw sewage is discharged directly into streams. Increase awareness and manage timing of pesticide applications that have the potential to harm aquatic communities. Improve compliance with water quality standards and pesticide use labels administered by the DEQ and U.S. Environmental Protection Agency (EPA). Reduce water pollution from agricultural sources and improve watershed conditions throughout the state through implementation of ODA rules and DEQ Total Maximum Daily Load water quality plans. Establish riparian buffer zones along streams adjacent to livestock feeding operations and farmland.  Improve efficiency of irrigation systems to reduce agricultural runoff and increase instream flow. Increase interaction between rivers and floodplains. Encourage opportunities for restoration of wetlands and channel meanders to increase water storage. During restoration, restore stream channels to promote flow, nutrient, and oxygen exchange. Where possible, provide sufficient room to restore meanders and other stream functions.

Limiting Factor: Water Temperature

High water temperatures, particularly summer stream temperatures, are a major threat to self-sustaining populations of native species and can severely limit population viability for Oregon’s native anadromous and cold-water species. Aquatic animals have specific requirements for a tolerable temperature range. Moreover, warmer water holds less dissolved oxygen, resulting in hypoxic conditions, especially during seasonal low flows. Hypoxia, which refers to low or depleted oxygen in a water body, may be lethal to organisms that extract oxygen from water, such as fish and amphibians. Water temperature may become too warm for native aquatic life because of alterations in stream flow, thermal pollution, or reduced riparian shading, especially during seasonal low flows. This threat to native species is likely to increase with predicted regional climate change effects that include prolonged droughts, higher air temperatures, lower snowpack, and shifts in timing of rainfall and snowmelt.

Recommended Approach

Assess riparian habitat conditions and implement planting projects to increase native riparian habitat cover and promote shade, which can limit thermal maxima in summer months. Maintain and restore in-stream flow to help preserve favorable water temperatures. Advance real-time water temperature monitoring and forecasting techniques and conduct monitoring in priority areas. Identify and protect cold-water resources and refugia. Minimize release of unnaturally warm water from dams and reservoirs when instream temperatures are high by altering intake/release structures and management.

Limiting Factor: Sedimentation

Sediment flows into streams from natural processes; however, it is exacerbated through human activities. Deposition of fine sediment in gravel-bottom rivers and streams fills the interstices of the gravel, reduces the velocity of water flow through the gravel, and decreases the dissolved oxygen content. An excess of fine sediments can cover eggs of native fish and amphibians, reduce cover and protection from predators, and create adverse physical conditions. Salmonids such as salmon and trout rely on clean gravel to build redds. When fine sediment fills the spaces between gravel it prevents water from flowing through redds and oxygenating trout and salmon eggs, which reduces egg survival. In more severe cases, sediment fills the spaces between gravel and can harden the streambed rendering it unusable to spawning salmonids. Sediment can also bury freshwater mussels and other aquatic mollusks. Aquatic insects rely on interstitial spaces between boulders, cobble, and gravel and many feed on periphyton that grows on these hard substrates. When sediment fills the spaces between large substrate or covers it completely, this habitat is lost, and streams can no longer support the invertebrate communities that feed fish and other wildlife.

Recommended Approach

Reduce run-off of fine sediment from logging, agriculture, grazing, roads, and other activities that could disturb soil or destabilize streambanks. Implement strategies and best management practices to reduce sedimentation including filtering run-off before it enters aquatic systems, decommissioning roads, installing green infrastructure, terracing fields, installing sediment control basins to reduce erosion, planting cover crops, and practicing conservation tillage. When constructing new roads, consider sediment removal capabilities in road design. Maintain and restore native riparian and wetland vegetation to filter sediments. Utilize large wood instream to improve stream channel complexity by increasing sediment retention and sorting, creating gravel bottom habitat, and promoting the formation of pool habitat.

Limiting Factor: Loss of Riparian Habitat, Floodplain Function, and Habitat Complexity

A large percentage of Oregon’s low-elevation and valley bottom riparian habitats have been altered or lost. Riparian habitat is often cleared, diked and converted into developed land, including urban areas, agricultural fields, or grazing pastures. Extensive removal of riparian habitat can lead to altered hydrological regimes, warmer water temperatures, erosion promoting downcutting or widening of stream banks, and loss of habitat complexity as floodplains and side channels become disconnected from streams. This loss of floodplain connectivity is a key limiting factor for nearly all listed anadromous fish species and many wildlife species. In addition, the increases in stream temperatures as a result of depleted riparian habitat often provide ideal habitat for non-native species (e.g., game fish such as bass), allowing the non-native species to thrive and outcompete native cold-water salmon and steelhead. Development within historical floodplains can restrict the natural ability of streams and riparian habitats to meander, limiting the creation and maintenance of new aquatic and riparian habitats. Lack of channel forming and flushing flows resulting from flood control efforts have also reduced floodplain processes, habitat creation, and habitat complexity. Developed floodplains are less effective in storing water and slowly releasing it back into the streams, filtering sediment and pollutants from surface water, and providing habitat for fish and wildlife. Losses of riparian habitat complexity and connectivity limit the value of these important places for wildlife to meet crucial life history needs.

Recommended Approach

Enhance or restore the extent and connectivity of existing riparian habitats. Promote lateral connectivity of the floodplain to off and side channel habitat. Use voluntary cooperative efforts and incentive programs (e.g., Conservation Reserve Enhancement Program, Riparian Lands Tax Incentive Program) to conserve, maintain, and restore riparian habitats on private lands. Identify and apply lessons learned from successful riparian restoration efforts on private lands to guide future projects. Develop tools and financial incentives to assist landowners with erosion prevention, as well as riparian area and streambank management best management practices. Provide outreach and education on the functions of riparian habitat and best management practices for landowners, including coordination with local governments on implementing Goal 5 protections and ODA for Agricultural Water Quality Management Area Plans.

Maintain and restore riparian buffers and minimize impacts from development actions. Close and revegetate unused roads on public lands. Support and encourage beaver occupancy and their canal and dam building activities, where possible, to restore floodplain-riparian processes and function when compatible with existing land uses.  Maintain channel integrity and natural hydrology. Ensure that adequate native riparian vegetation remains following management activities to prevent erosion, preserve water quality, and maintain water temperatures favorable for aquatic life. Restore lost vegetation through planting of native trees, shrubs, and ground cover, and manage for future sources of large woody debris. Maintain and/or expand existing tracts of large trees, such as cottonwoods, to benefit riparian habitat function.

Limiting Factor: Riparian Habitat Degradation

In the Blue Mountains, Northern Basin and Range, East Cascades, and Columbia Plateau ecoregions, historical overgrazing has led to soil erosion, poor regeneration of hardwood trees and shrubs, changes in plant species composition and structure, and degradation by invasive plants. Although some areas are slowly recovering, many miles of stream are still lacking adequate riparian vegetation. Ongoing grazing impacts remain in some areas, especially at low and mid elevations. Western juniper is encroaching in some riparian areas of eastern Oregon.

Recommended Approach

In cooperation with landowners, land managers, and grazing lessees, encourage approaches such as off-site watering or active management that keep livestock out of riparian areas. Develop and implement grazing regimes that are compatible with riparian conservation objectives. Selectively fence restoration sites or other high priority areas to exclude ungulates. Evaluate impacts by encroaching western juniper and remove juniper from upper reaches of higher elevation watersheds, if appropriate. Plant riparian vegetation using native species at priority sites. Work with landowners and grazing permittees to support riparian conservation and land management objectives.

Limiting Factor: Invasive Plants in Riparian Habitat

Invasive plants, such as knapweeds, knotweeds, reed canary grass, Himalayan blackberry, thistles, poison hemlock, and teasels, degrade riparian habitats by competing with and replacing native plants. In the Columbia Plateau and Northern Basin and Range ecoregions, pasture grasses and cheatgrass commonly dominate the understory. Invasive plants can alter the structure of riparian habitats, creating dense monocultures that hinder the growth of native vegetation and changing the physical structure of the streambank. They often provide insufficient food and habitat resources, displacing fish and wildlife and reducing biodiversity.

Recommended Approach

Control key invasive plants using site-appropriate tools, including fire and mechanical, biological, and chemical treatments. Use chemical treatments carefully and where compatible with water quality concerns, focusing on spot treatment during the dry season. Partner with Soil and Water Conservation Districts or other experts to control invasive weeds and restore riparian habitats. In the Columbia Plateau and Northern Basin and Range ecoregions, focus control at low-elevation sites. Provide information to local governments and landowners about potential invasive plants. Where necessary, develop and implement grazing management regimes that are compatible with riparian conservation objectives. Replace invasive plants with local native species so there is no net loss of wildlife habitat in the long term.

Resources for more information